""" run this before using this library: ipython -i keithley_interactive.py always records iv-t curves i-data -> smua.nvbuffer1 v-data -> smua.nvbuffer2 """ import numpy as np import matplotlib.pyplot as plt import pandas as pd from datetime import datetime as dtime from sys import exit from time import sleep from os import path, makedirs import pickle as pkl import json if __name__ == "__main__": if __package__ is None: # make relative imports work as described here: https://peps.python.org/pep-0366/#proposed-change __package__ = "k-teng" import sys from os import path filepath = path.realpath(path.abspath(__file__)) sys.path.insert(0, path.dirname(path.dirname(filepath))) from .keithley import keithley as _keithley from .utility import data as _data from .utility import file_io from .utility import testing _runtime_vars = { "last-measurement": "" } settings = { "datadir": path.expanduser("~/data"), "name": "measurement", "interval": 0.01, "beep": True, } config_path = path.expanduser("~/.config/k-teng.json") test = False # global variable for the instrument returned by pyvisa k = None def _measure(max_measurements=None, max_points_shown=None, monitor=False): """ Monitor the voltage with matplotlib. @details: - Resets the buffers - Opens a matplotlib window and takes measurements depending on settings["interval"] - Waits for the user to press a key @param max_points_shown : how many points should be shown at once. None means infinite @param max_measurements : maximum number of measurements. None means infinite You can take the data from the buffer afterwards, using save_csv """ global k, settings, test, _runtime_vars print(f"Starting measurement with:\n\tinterval = {settings['interval']}s\nUse to stop. Save the data using 'save_csv()' afterwards.") _runtime_vars["last_measurement"] = dtime.now().isoformat() if not test: _keithley.reset(k, verbose=True) k.write("smua.source.output = 1") k.write("format.data = format.ASCII\nformat.asciiprecision = 12") # jupyter: # clear_output(wait=True) # plt.plot(data) # plt.show() index = [] vdata = [] idata = [] if monitor: plt.ion() fig1, (vax, iax) = plt.subplots(2, 1) vline, = vax.plot(index, vdata, color="g") vax.set_ylabel("Voltage [V]") vax.grid(True) iline, = iax.plot(index, idata, color="m") iax.set_ylabel("Current [A]") iax.grid(True) try: i = 0 while max_measurements is None or i < max_measurements: index.append(i) if test: idata.append(testing.testcurve(i, peak_width=1, amplitude=5e-8)) vdata.append(-testing.testcurve(i, peak_width=2, amplitude=15)) # data.append(np.random.rand()) else: # data.append(float(k.query("print(smua.measure.v(smua.nvbuffer1))").strip('\n'))) i_val, v_val = tuple(float(v) for v in k.query("print(smua.measure.iv(smua.nvbuffer1, smua.nvbuffer2))").strip('\n').split('\t')) idata.append(i_val) vdata.append(v_val) print(f"{i:5d} - {idata[-1]:.12f} A - {vdata[-1]:.5f} V", end='\r') if monitor: # update data iline.set_xdata(index) iline.set_ydata(idata) vline.set_xdata(index) vline.set_ydata(vdata) # recalculate limits and set them for the view iax.relim() vax.relim() if max_points_shown and i > max_points_shown: iax.set_xlim(i - max_points_shown, i) vax.set_xlim(i - max_points_shown, i) iax.autoscale_view() vax.autoscale_view() # update plot fig1.canvas.draw() fig1.canvas.flush_events() sleep(settings["interval"]) i += 1 except KeyboardInterrupt: if not test: k.write("smua.source.output = 0") if monitor: plt.close(fig1) print("Measurement stopped" + " "*50) return vdata, idata def monitor(max_measurements=None, max_points_shown=160): """ Monitor the voltage with matplotlib. @details: - Resets the buffers - Opens a matplotlib window and takes measurements depending on settings["interval"] - Waits for the user to press a key @param max_points_shown : how many points should be shown at once. None means infinite @param max_measurements : maximum number of measurements. None means infinite You can take the data from the buffer afterwards, using save_csv """ _measure(max_measurements=max_measurements, max_points_shown=max_points_shown, monitor=True) def measure(max_measurements=None): """ Measure voltages @details: - Resets the buffers - Measure voltages - Waits for the user to press a key @param max_measurements : maximum number of measurements. None means infinite You can take the data from the buffer afterwards, using save_csv """ _measure(max_measurements=max_measurements, monitor=False) def get_dataframe(): """ Get a pandas dataframe from the data in smua.nvbuffer1 """ global k, settings, _runtime_vars if test: timestamps = np.arange(0, 50, 0.01) ydata = np.array([testing.testcurve(t, amplitude=15, peak_width=2) for t in timestamps]) ibuffer = np.vstack((timestamps, ydata)).T ydata = np.array([-testing.testcurve(t, amplitude=5e-8, peak_width=1) for t in timestamps]) vbuffer = np.vstack((timestamps, ydata)).T else: ibuffer = _keithley.collect_buffer(k, 1) vbuffer = _keithley.collect_buffer(k, 2) df = _data.buffers2dataframe(ibuffer, vbuffer) df.basename = file_io.get_next_filename(settings["name"], settings["datadir"]) df.name = f"{df.basename} @ {_runtime_vars['last-measurement']}" return df def save_csv(): """ Saves the contents of nvbuffer1 as .csv The settings 'datadir' and 'name' are used for determining the filepath: 'datadir/nameXXX.csv', where XXX is the number of files that exist in datadir with the same name. """ df = get_dataframe() filename = settings["datadir"] + "/" + df.basename + ".csv" df.to_csv(filename, index=False, header=True) print(f"Saved as '{filename}'") def save_pickle(): """ Saves the contents of nvbuffer1 as .pkl The settings 'datadir' and 'name' are used for determining the filepath: 'datadir/nameXXX.pkl', where XXX is the number of files that exist in datadir with the same name. """ df = get_dataframe() filename = settings["datadir"] + "/" + df.basename + ".pkl" df.to_pickle(filename) print(f"Saved as '{filename}'") def load_dataframe(p:str): """ Load a dataframe from file. @param p : path of the file. If it has 'csv' extension, pandas.read_csv is used, pandas.read_pickle otherwise """ if not path.isfile(p): print(f"ERROR: load_dataframe: File does not exist: {p}") return None if p.endswith(".csv"): df = pd.read_csv(p) else: df = pd.read_pickle(p) return df def run_script(script_path): """ Run a lua script on the Keithley device @param script_path : relative or absolute path to the .lua script """ global k, settings if test: print("run_script: Test mode enabled, ignoring call to run_script") else: _keithley.run_lua(k, script_path=script_path) def set(setting, value): global settings, config_path if setting in settings: if type(value) != type(settings[setting]): print(f"set: setting '{setting}' currently holds a value of type '{type(settings[setting])}'") return settings[setting] = value def name(s:str): global settings settings["name"] = s def save_settings(): with open(config_path, "w") as file: json.dump(settings, file, indent=4) def load_settings(): global settings, config_path with open(config_path, "r") as file: settings = json.load(file) settings["datadir"] = path.expanduser(settings["datadir"]) def help(topic=None): if topic == None: print(""" Functions: measure - measure the voltage monitor - measure the voltage with live monitoring in a matplotlib window get_dataframe - return smua.nvbuffer1 as pandas dataframe save_csv - save the last measurement as csv file save_pickle - save the last measurement as pickled pandas dataframe load_dataframe - load a pandas dataframe from csv or pickle run_script - run a lua script on the Keithely device Run 'help(function)' to see more information on a function Available topics: imports device settings Run 'help("topic")' to see more information on a topic""") elif topic in [settings, "settings"]: print("""Settings: name: str - name of the measurement, determines filename of 'save_csv' datadir: str - output directory for the csv files interval: int - interval (inverse frequency) of the measurements, in seconds beep: bool - wether the device should beep or not Functions: name("") - short for set("name", "") set("setting", value) - set a setting to a value save_settings() - store the settings as "k-teng.conf" in the working directory load_settings() - load settings from a file The global variable 'config_path' determines the path used by save/load_settings. Use -c '' to set another path. The serach path is: /k-teng.json $XDG_CONFIG_HOME/k-teng.json ~/.config/k-teng.json """) elif topic == "imports": print("""Imports: numpy as np pandas as pd matplotlib.pyplot as plt os.path """) elif topic == "device": print("""Device: The opened pyvisa resource (Keithley device) is the global variable 'k'. You can interact using pyvisa functions, such as k.write("command"), k.query("command") etc. to interact with the device.""") else: print(topic.__doc__) def init(): global k, settings, test, config_path print(r""" ____ __. ______________________ _______ ________ | |/ _| \__ ___/\_ _____/ \ \ / _____/ | < ______ | | | __)_ / | \ / \ ___ | | \ /_____/ | | | \/ | \\ \_\ \ |____|__ \ |____| /_______ /\____|__ / \______ / \/ \/ \/ \/ 1.0 Interactive Shell for TENG measurements with Keithley 2600B --- Enter 'help()' for a list of commands""") from os import environ if path.isfile("k-teng.json"): config_path = "k-teng.json" elif 'XDG_CONFIG_HOME' in environ.keys(): # and path.isfile(environ["XDG_CONFIG_HOME"] + "/k-teng.json"): config_path = environ["XDG_CONFIG_HOME"] + "/k-teng.json" else: config_path = path.expanduser("~/.config/k-teng.json") from sys import argv i = 1 while i < len(argv): if argv[i] in ["-t", "--test"]: test = True elif argv[i] in ["-c", "--config"]: if i+1 < len(argv): config_path = argv[i+1] else: print("-c requires an extra argument: path of config file") i += 1 i += 1 if not path.isdir(path.dirname(config_path)): makedirs(path.dirname(config_path)) if path.isfile(config_path): load_settings() if not path.isdir(settings["datadir"]): makedirs(settings["datadir"]) if not test: from .keithley.keithley import init_keithley try: k = init_keithley(beep_success=settings["beep"]) except Exception as e: print(e) exit() else: print("Running in test mode, device will not be connected.") if __name__ == "__main__": init()