diff --git a/LICENSE b/LICENSE
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--- /dev/null
+++ b/LICENSE
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+ GNU GENERAL PUBLIC LICENSE
+ Version 3, 29 June 2007
+
+ Copyright (C) 2007 Free Software Foundation, Inc.
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+Program, unless a warranty or assumption of liability accompanies a
+copy of the Program in return for a fee.
+
+ END OF TERMS AND CONDITIONS
+
+ How to Apply These Terms to Your New Programs
+
+ If you develop a new program, and you want it to be of the greatest
+possible use to the public, the best way to achieve this is to make it
+free software which everyone can redistribute and change under these terms.
+
+ To do so, attach the following notices to the program. It is safest
+to attach them to the start of each source file to most effectively
+state the exclusion of warranty; and each file should have at least
+the "copyright" line and a pointer to where the full notice is found.
+
+
+ Copyright (C)
+
+ This program is free software: you can redistribute it and/or modify
+ it under the terms of the GNU General Public License as published by
+ the Free Software Foundation, either version 3 of the License, or
+ (at your option) any later version.
+
+ This program is distributed in the hope that it will be useful,
+ but WITHOUT ANY WARRANTY; without even the implied warranty of
+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ GNU General Public License for more details.
+
+ You should have received a copy of the GNU General Public License
+ along with this program. If not, see .
+
+Also add information on how to contact you by electronic and paper mail.
+
+ If the program does terminal interaction, make it output a short
+notice like this when it starts in an interactive mode:
+
+ Copyright (C)
+ This program comes with ABSOLUTELY NO WARRANTY; for details type `show w'.
+ This is free software, and you are welcome to redistribute it
+ under certain conditions; type `show c' for details.
+
+The hypothetical commands `show w' and `show c' should show the appropriate
+parts of the General Public License. Of course, your program's commands
+might be different; for a GUI interface, you would use an "about box".
+
+ You should also get your employer (if you work as a programmer) or school,
+if any, to sign a "copyright disclaimer" for the program, if necessary.
+For more information on this, and how to apply and follow the GNU GPL, see
+.
+
+ The GNU General Public License does not permit incorporating your program
+into proprietary programs. If your program is a subroutine library, you
+may consider it more useful to permit linking proprietary applications with
+the library. If this is what you want to do, use the GNU Lesser General
+Public License instead of this License. But first, please read
+.
diff --git a/k-teng/__init__.py b/k-teng/__init__.py
new file mode 100644
index 0000000..e69de29
diff --git a/k-teng/k-teng-interactive.py b/k-teng/k-teng-interactive.py
new file mode 100644
index 0000000..db2059a
--- /dev/null
+++ b/k-teng/k-teng-interactive.py
@@ -0,0 +1,320 @@
+"""
+run this before using this library:
+ipython -i keithley_interactive.py
+"""
+
+import numpy as np
+import matplotlib.pyplot as plt
+import pandas as pd
+
+from datetime import datetime as dtime
+from sys import exit
+from time import sleep
+from os import path, makedirs
+import pickle as pkl
+import json
+
+if __name__ == "__main__":
+ if __package__ is None:
+ # make relative imports work as described here: https://peps.python.org/pep-0366/#proposed-change
+ __package__ = "k-teng"
+ import sys
+ from os import path
+ filepath = path.realpath(path.abspath(__file__))
+ sys.path.insert(0, path.dirname(path.dirname(filepath)))
+
+
+from .keithley import keithley as _keithley
+from .utility import data
+from .utility import file_io
+from .utility import testing
+
+_runtime_vars = {
+ "last-measurement": ""
+}
+
+settings = {
+ "datadir": path.expanduser("~/data"),
+ "name": "measurement",
+ "interval": 0.01,
+ "beep": True,
+}
+config_path = path.expanduser("~/.config/k-teng.json")
+
+test = False
+
+# global variable for the instrument returned by pyvisa
+k = None
+
+
+def _measure(max_measurements=None, max_points_shown=None, monitor=False):
+ """
+ Monitor the voltage with matplotlib.
+
+ @details:
+ - Resets the buffers
+ - Opens a matplotlib window and takes measurements depending on settings["interval"]
+ - Waits for the user to press a key
+ @param max_points_shown : how many points should be shown at once. None means infinite
+ @param max_measurements : maximum number of measurements. None means infinite
+ You can take the data from the buffer afterwards, using save_csv """
+ global k, settings, test, _runtime_vars
+ print(f"Starting measurement with:\n\tinterval = {settings['interval']}s\nUse to stop. Save the data using 'save_csv()' afterwards.")
+ _runtime_vars["last_measurement"] = dtime.now().isoformat()
+ # jupyter:
+ # clear_output(wait=True)
+ # plt.plot(data)
+ # plt.show()
+ index = []
+ data = []
+ if monitor:
+ plt.ion()
+ fig = plt.figure()
+ ax = fig.add_subplot(ylabel="Voltage [V]")
+ line1, = ax.plot(index, data)
+ try:
+ i = 0
+ while max_measurements is None or i < max_measurements:
+ index.append(i)
+ if test:
+ data.append(testing.testcurve(i))
+ # data.append(tuple(float(v) for v in instr.query("print(smua.measure.v())").strip('\n').split('\t')))
+ else:
+ data.append(k.query("print(smua.measure.v())").strip('\n'))
+ # data.append(np.random.rand())
+ print(f"{i:5d} - {data[-1]:.5f} V", end='\r')
+ if monitor:
+ # update data
+ line1.set_xdata(index)
+ line1.set_ydata(data)
+ # recalculate limits and set them for the view
+ ax.relim()
+ if max_points_shown and i > max_points_shown:
+ ax.set_xlim(i - max_points_shown, i)
+ ax.autoscale_view()
+ # update plot
+ fig.canvas.draw()
+ fig.canvas.flush_events()
+ sleep(settings["interval"])
+ i += 1
+ except KeyboardInterrupt:
+ if monitor:
+ plt.close(fig)
+ print("Measurement stopped" + " "*50)
+
+
+def monitor(max_measurements=None, max_points_shown=None, ):
+ """
+ Monitor the voltage with matplotlib.
+
+ @details:
+ - Resets the buffers
+ - Opens a matplotlib window and takes measurements depending on settings["interval"]
+ - Waits for the user to press a key
+ @param max_points_shown : how many points should be shown at once. None means infinite
+ @param max_measurements : maximum number of measurements. None means infinite
+ You can take the data from the buffer afterwards, using save_csv """
+ _measure(max_measurements=max_measurements, max_points_shown=max_points_shown, monitor=True)
+
+
+def measure(max_measurements=None):
+ """
+ Measure voltages
+
+ @details:
+ - Resets the buffers
+ - Measure voltages
+ - Waits for the user to press a key
+ @param max_measurements : maximum number of measurements. None means infinite
+ You can take the data from the buffer afterwards, using save_csv """
+ _measure(max_measurements=max_measurements, monitor=False)
+
+
+def get_dataframe():
+ global k, settings, _runtime_vars
+ if test:
+ timestamps = np.arange(0, 50, 0.01)
+ ydata = np.array([testing.testcurve(t) for t in timestamps])
+ buffer = np.vstack((timestamps, ydata)).T
+ else:
+ buffer = _keithley.collect_buffer(k, 1)
+ df = data.buffer2dataframe(buffer)
+ df.basename = file_io.get_next_filename(settings["name"], settings["datadir"])
+ df.name = f"{df.basename} @ {_runtime_vars['last-measurement']}"
+ df.columns = ["Time [s]", "Voltage [V]"]
+ return df
+
+def save_csv():
+ """
+ Saves the contents of nvbuffer1 as .csv
+ The settings 'datadir' and 'name' are used for determining the filepath:
+ 'datadir/nameXXX.csv', where XXX is the number of files that exist in datadir with the same name.
+ """
+ df = get_dataframe()
+ filename = settings["datadir"] + "/" + df.basename + ".csv"
+ df.to_csv(filename, index=False, header=True)
+ print(f"Saved as '{filename}'")
+
+
+def save_pickle():
+ """
+ Saves the contents of nvbuffer1 as .pkl
+ The settings 'datadir' and 'name' are used for determining the filepath:
+ 'datadir/nameXXX.pkl', where XXX is the number of files that exist in datadir with the same name.
+ """
+ df = get_dataframe()
+ filename = settings["datadir"] + "/" + df.basename + ".pkl"
+ df.to_pickle(filename)
+ print(f"Saved as '{filename}'")
+
+def load_dataframe(p:str):
+ """
+ Load a dataframe from file.
+ @param p : path of the file. If it has 'csv' extension, pandas.read_csv is used, pandas.read_pickle otherwise
+ """
+ if not path.isfile(p):
+ print(f"ERROR: load_dataframe: File does not exist: {p}")
+ return None
+ if p.endswith(".csv"):
+ df = pd.read_csv(p)
+ else:
+ df = pd.read_pickle(p)
+ return df
+
+def run_script(script_path):
+ """
+ Run a lua script on the Keithley device
+ @param script_path : relative or absolute path to the .lua script
+ """
+ global k, settings
+ if test:
+ print("run_script: Test mode enabled, ignoring call to run_script")
+ else:
+ _keithley.run_lua(k, script_path=script_path)
+
+
+def set(setting, value):
+ global settings, config_path
+ if setting in settings:
+ if type(value) != type(settings[setting]):
+ print(f"set: setting '{setting}' currently holds a value of type '{type(settings[setting])}'")
+ return
+ settings[setting] = value
+
+
+def save_settings():
+ with open(config_path, "w") as file:
+ json.dump(settings, file, indent=4)
+
+def load_settings():
+ global settings, config_path
+ with open(config_path, "r") as file:
+ settings = json.load(file)
+ settings["datadir"] = path.expanduser(settings["datadir"])
+
+def help(topic=None):
+ if topic == None:
+ print("""
+Functions:
+ measure - measure the voltage
+ monitor - measure the voltage with live monitoring in a matplotlib window
+ save_csv - save the last measurement as csv file
+ save_pickle - save the last measurement as pickled pandas dataframe
+ load_dataframe - load a pandas dataframe from csv or pickle
+ run_script - run a lua script on the Keithely device
+Run 'help(function)' to see more information on a function
+
+Available topics:
+ imports
+ device
+ settings
+Run 'help("topic")' to see more information on a topic""")
+
+ elif topic in [settings, "settings"]:
+ print("""Settings:
+ name: str - name of the measurement, determines filename of 'save_csv'
+ datadir: str - output directory for the csv files
+ interval: int - interval (inverse frequency) of the measurements, in seconds
+ beep: bool - wether the device should beep or not
+
+Functions:
+ TODO set("setting", value) - set a setting to a value
+ TODO save_settings() - store the settings as "k-teng.conf" in the working directory
+ TODO load_settings() - load settings from a file
+ The global variable 'config_path' determines the path used by save/load_settings. Use -c '' to set another path.
+ The serach path is:
+ /k-teng.json
+ $XDG_CONFIG_HOME/k-teng.json
+ ~/.config/k-teng.json
+ """)
+ elif topic == "imports":
+ print("""Imports:
+ numpy as np
+ pandas as pd
+ matplotlib.pyplot as plt
+ os.path """)
+ elif topic == "device":
+ print("""Device:
+ The opened pyvisa resource (Keithley device) is the global variable 'k'.
+ You can interact using pyvisa functions, such as
+ k.write("command"), k.query("command") etc. to interact with the device.""")
+ else:
+ print(topic.__doc__)
+
+
+def init():
+ global k, settings, test, config_path
+ print(r""" ____ __. ______________________ _______ ________
+| |/ _| \__ ___/\_ _____/ \ \ / _____/
+| < ______ | | | __)_ / | \ / \ ___
+| | \ /_____/ | | | \/ | \\ \_\ \
+|____|__ \ |____| /_______ /\____|__ / \______ /
+ \/ \/ \/ \/ 1.0
+Interactive Shell for TENG measurements with Keithley 2600B
+---
+Enter 'help()' for a list of commands""")
+ from os import environ
+ if path.isfile("k-teng.json"):
+ config_path = "k-teng.json"
+ elif 'XDG_CONFIG_HOME' in environ.keys():
+ # and path.isfile(environ["XDG_CONFIG_HOME"] + "/k-teng.json"):
+ config_path = environ["XDG_CONFIG_HOME"] + "/k-teng.json"
+ else:
+ config_path = path.expanduser("~/.config/k-teng.json")
+
+ from sys import argv
+ i = 1
+ while i < len(argv):
+ if argv[i] in ["-t", "--test"]:
+ test = True
+ elif argv[i] in ["-c", "--config"]:
+ if i+1 < len(argv):
+ config_path = argv[i+1]
+ else:
+ print("-c requires an extra argument: path of config file")
+ i += 1
+ i += 1
+
+
+ if not path.isdir(path.dirname(config_path)):
+ makedirs(path.dirname(config_path))
+
+ if path.isfile(config_path):
+ load_settings()
+
+ if not path.isdir(settings["datadir"]):
+ makedirs(settings["datadir"])
+
+ if not test:
+ from .keithley.keithley import init_keithley
+ try:
+ k = init_keithley(beep_success=settings["beep"])
+ except Exception as e:
+ print(e)
+ exit()
+ else:
+ print("Running in test mode, device will not be connected.")
+
+
+if __name__ == "__main__":
+ init()
diff --git a/k-teng/keithley/__init__.py b/k-teng/keithley/__init__.py
new file mode 100644
index 0000000..e69de29
diff --git a/k-teng/keithley/keithley.py b/k-teng/keithley/keithley.py
new file mode 100644
index 0000000..2ca79fd
--- /dev/null
+++ b/k-teng/keithley/keithley.py
@@ -0,0 +1,77 @@
+import pyvisa
+import numpy as np
+
+
+"""
+Utility
+"""
+script_dir = "scripts/"
+scripts = {
+ "buffer_reset": "buffer_reset.lua",
+ "smua_reset": "smua_reset.lua",
+}
+for key,val in scripts.items():
+ scripts[key] = script_dir + scripts[key]
+
+
+
+def init_keithley(beep_success=True):
+ rm = pyvisa.ResourceManager('@py')
+ resources = rm.list_resources()
+ if len(resources) < 1:
+ raise Exception("No resources found.")
+ elif len(resources) == 1:
+ print(f"Opening Resource {resources[0]}")
+ keithley = rm.open_resource(resources[0])
+ if beep_success: keithley.write("beeper.beep(0.5, 1000)")
+ return keithley
+ elif len(resources) > 1:
+ print(f"Resources: {resources}")
+ instr = int(input("Select an instrument (0-based index)"))
+ keithley = rm.open_resource(resources[instr])
+ if beep_success: keithley.write("beeper.beep(0.5, 1000)")
+ return keithley
+
+
+def run_lua(instr, script_path, verbose=False):
+ """
+ Run a lua script from the host on the instrument
+ @param instr : pyvisa instrument
+ @param script_path : full path to the script
+ """
+ with open(script_path, "r") as file:
+ script = file.read()
+ if verbose: print(f"Running script: {script_path}")
+ instr.write(script)
+
+
+def reset(instr, verbose=False):
+ """
+ Reset smua and its buffers
+ @param instr : pyvisa instrument
+ """
+ run_lua(instr, scripts["smua_reset"], verbose=verbose)
+ run_lua(instr, scripts["buffer_reset"], verbose=verbose)
+
+
+def collect_buffer(instr, buffer_nr=1):
+ """
+ Get the buffer as 2D - np.array
+ @param instr : pyvisa instrument
+ @param buffer_nr : 1 or 2, for smua.nvbuffer1 or 2
+ @returns 2D numpy array:
+ i - ith reading:
+ 0: timestamps
+ 1: readings
+ """
+ if buffer_nr == 2: buffername = "smua.nvbuffer2"
+ else: buffername = "smua.nvbuffer1"
+ # instr.write("format.data = format.DREAL\nformat.byteorder = format.LITTLEENDIAN")
+ # buffer = instr.query_binary_values(f"printbuffer(1, {buffername}.n, {buffername})", datatype='d', container=np.array)
+ instr.write("format.data = format.ASCII\nformat.asciiprecision = 7")
+ timestamps = instr.query_ascii_values(f"printbuffer(1, {buffername}.n, {buffername}.timestamps)", container=np.array)
+ readings = instr.query_ascii_values(f"printbuffer(1, {buffername}.n, {buffername}.readings)", container=np.array)
+ print(f"readings: {readings}, \ntimestamps: {timestamps}")
+ buffer = np.vstack((timestamps, readings)).T
+ return buffer
+
diff --git a/measure.py b/k-teng/keithley/measure.py
similarity index 72%
rename from measure.py
rename to k-teng/keithley/measure.py
index d15b031..7d06b69 100644
--- a/measure.py
+++ b/k-teng/keithley/measure.py
@@ -15,17 +15,23 @@ smua.measure.rangev = 20
"""
script_dir = "scripts/"
-
scripts = {
"buffer_reset": "buffer_reset.lua",
"smua_reset": "smua_reset.lua",
}
+for key,val in scripts.items():
+ scripts[key] = script_dir + scripts[key]
def run_lua(instr, script_path, verbose=False):
- with open(script_dir + script_path, "r") as file:
+ """
+ Run a lua script from the host on the instrument
+ @param instr : pyvisa instrument
+ @param script_path : full path to the script
+ """
+ with open(script_path, "r") as file:
script = file.read()
- if verbose: print(f"Running script: {script_dir + script_path}")
+ if verbose: print(f"Running script: {script_path}")
instr.write(script)
@@ -41,7 +47,11 @@ def measure_V(instr, count=100, interval=0.05):
plt.show()
sleep(0.05)
-def reset(instr):
+def reset(instr, verbose=False):
+ """
+ Reset smua and its buffers
+ @param instr : pyvisa instrument
+ """
run_lua(instr, scripts["smua_reset"], verbose=verbose)
run_lua(instr, scripts["buffer_reset"], verbose=verbose)
@@ -49,8 +59,9 @@ def reset(instr):
def measure_count(instr, V=True, I=True, count=100, interval=0.05, beep_done=True, verbose=True):
"""
take n measurements at dt interval
+ @param instr : pyvisa instrument
"""
- reset(instr)
+ reset(instr, verbose=verbose)
f_meas = None
if V and I:
f_meas = "smua.measure.iv(smua.nvbuffer1, smua.nvbuffer2)"
@@ -73,25 +84,6 @@ def measure_count(instr, V=True, I=True, count=100, interval=0.05, beep_done=Tru
instr.write("beeper.beep(0.3, 1000)")
-def collect_buffer(instr, buffer_nr=1):
- """
- get the buffer as 2D - np.array
- i - ith reading
- 0: timestamps
- 1: readings
- """
- if buffer_nr == 2: buffername = "smua.nvbuffer2"
- else: buffername = "smua.nvbuffer1"
- # instr.write("format.data = format.DREAL\nformat.byteorder = format.LITTLEENDIAN")
- # buffer = instr.query_binary_values(f"printbuffer(1, {buffername}.n, {buffername})", datatype='d', container=np.array)
- instr.write("format.data = format.ASCII\nformat.asciiprecision = 7")
- timestamps = instr.query_ascii_values(f"printbuffer(1, {buffername}.n, {buffername}.timestamps)", container=np.array)
- readings = instr.query_ascii_values(f"printbuffer(1, {buffername}.n, {buffername}.readings)", container=np.array)
- print(f"readings: {readings}, \ntimestamps: {timestamps}")
- buffer = np.vstack((timestamps, readings)).T
- return buffer
-
-
def event_test_TODO():
# Type of event we want to be notified about
diff --git a/k-teng/test.py b/k-teng/test.py
new file mode 100644
index 0000000..7480266
--- /dev/null
+++ b/k-teng/test.py
@@ -0,0 +1,49 @@
+readings = [
+ 4.974127e-10, -1.418591e-12, -1.573563e-12, -1.728535e-12, -1.704693e-12,
+ -1.847744e-12, -1.931190e-12, -1.788139e-12, -1.871586e-12, -2.169609e-12,
+ -2.074242e-12, -1.895428e-12, -1.895428e-12, -1.776218e-12, -1.990795e-12,
+ -1.788139e-12, -1.811981e-12, -1.657009e-12, -1.573563e-12, -2.396107e-12,
+ -2.515316e-12, -2.765656e-12, -2.825260e-12, -3.147125e-12, -2.300739e-12,
+ -2.825260e-12, -3.278255e-12, -5.257130e-12, -6.818771e-12, -8.916855e-12,
+ -7.712841e-12, 6.437302e-12, -1.142025e-11, -1.206398e-11, -4.649043e-10,
+ -3.427613e-09, -2.460408e-09, -2.340376e-09, -1.306653e-10, 1.496077e-11,
+ 2.933741e-11, 1.953280e-09, 8.579970e-10, 9.226799e-12, -1.095533e-11,
+ -2.508163e-11, -2.776039e-09, -8.686423e-09, 4.935264e-12, 1.246929e-11,
+ 3.225744e-09, 2.814472e-09, 1.877034e-09, 2.229273e-09, 1.713574e-09,
+ 8.355618e-10, -4.332781e-10, 5.896091e-11, 5.762577e-11, 8.129537e-09,
+ 4.044378e-09, 1.771629e-09, 7.849216e-10, 4.098892e-10, 3.390551e-10,
+ 2.956390e-10, 3.033876e-10, 1.716256e-10, 1.463890e-11, -5.078316e-12,
+ -6.949902e-12, -8.106232e-12, -6.473065e-12, -4.506111e-12, 4.919767e-11,
+ 3.052297e-08, 1.161162e-08, -9.892106e-09, -3.613818e-09, -5.004287e-09,
+ -2.015829e-11, -4.183054e-11, -1.810908e-10, -2.042532e-10, -3.516316e-10,
+ 5.099773e-11, 1.921976e-08, -1.256589e-08, -4.242897e-10, -1.358986e-12,
+ -3.445148e-12, -3.838539e-12, -4.184246e-12, -7.402897e-12, -2.840877e-10,
+ -2.872229e-10, -2.730966e-10, -1.134396e-10, -4.376173e-11, -3.576279e-14
+]
+timestamps = [
+ 0. , 0.05 , 0.1 , 0.15, 0.2, 0.25, 0.3, 0.35,
+ 0.4 , 0.45 , 0.5 , 0.55, 0.6, 0.65, 0.7, 0.75,
+ 0.8 , 0.85 , 0.9 , 0.95, 1. , 1.05, 1.1, 1.15,
+ 1.2 , 1.25 , 1.3 , 1.35, 1.4, 1.45, 1.5, 1.55,
+ 1.6 , 1.690891, 1.710923, 1.75, 1.8, 1.85, 1.9, 1.95,
+ 2. , 2.05 , 2.1 , 2.15, 2.2, 2.25, 2.3, 2.35,
+ 2.420332, 2.45 , 2.5 , 2.55, 2.6, 2.65, 2.7, 2.75,
+ 2.820553, 2.890843, 2.910875, 2.95, 3. , 3.05, 3.1, 3.15,
+ 3.2 , 3.25 , 3.3 , 3.35, 3.4, 3.45, 3.5, 3.55,
+ 3.6 , 3.65 , 3.7 , 3.75, 3.8, 3.85, 3.9, 3.95,
+ 4. , 4.05 , 4.1 , 4.15, 4.2, 4.25, 4.3, 4.35,
+ 4.4 , 4.45 , 4.5 , 4.55, 4.6, 4.65, 4.7, 4.75,
+ 4.8 , 4.85 , 4.9 , 4.95, ]
+
+import pandas as pd
+import numpy as np
+import scipy as sp
+import matplotlib.pyplot as plt
+df = pd.DataFrame(np.vstack((timestamps, readings)).T)
+df.columns = ["Time [s]", "Voltage [V]"]
+print(df)
+df.to_csv("test.csv", sep=",", header=True, index=False)
+
+df.plot(x='Time [s]', y="Voltage [V]")
+plt.show()
+
diff --git a/k-teng/testcurve.py b/k-teng/testcurve.py
new file mode 100644
index 0000000..9cbc49b
--- /dev/null
+++ b/k-teng/testcurve.py
@@ -0,0 +1,33 @@
+import numpy as np
+import matplotlib.pyplot as plt
+
+def testcurve(x, frequency=10, peak_width=2, amplitude=20, bias=0):
+ # want peak at n*time == frequency
+ nearest_peak = np.round(x / frequency, 0)
+ # if not peak at 0 and within peak_width
+ # print(x, nearest_peak)
+ if nearest_peak > 0 and abs((x - nearest_peak * frequency)) < peak_width:
+ # return sin that does one period within 2*peak_width
+ return amplitude * np.sin(2*np.pi * (x - nearest_peak * frequency - peak_width) / (2*peak_width)) + bias
+ else:
+ return bias
+
+ # 0 = pk - width
+ # 2pi = pk + width
+
+def baseline(data):
+ # find the value where the most values with low gradients are closest to
+ gradients = np.abs(np.gradient(data))
+ # consider the values where the absolute gradient is in the bottom 20%
+ n_gradients = len(data) // 20
+ consider_indices = np.argsort(gradients)[:n_gradients]
+ # of those, only consider values where the value
+ consider_values = data[consider_indices]
+
+
+xdata = np.arange(0, 100, 0.01)
+ydata = np.vectorize(testcurve)(xdata)
+
+
+plt.plot(xdata, ydata)
+plt.show()
diff --git a/k-teng/utility/__init__.py b/k-teng/utility/__init__.py
new file mode 100644
index 0000000..e69de29
diff --git a/k-teng/utility/data.py b/k-teng/utility/data.py
new file mode 100644
index 0000000..e885cdf
--- /dev/null
+++ b/k-teng/utility/data.py
@@ -0,0 +1,8 @@
+import pandas as pd
+import numpy as np
+
+def buffer2dataframe(buffer):
+ df = pd.DataFrame(buffer)
+ df.colums = ["Time [s]", "Voltage [V]"]
+ return df
+
diff --git a/file_io.py b/k-teng/utility/file_io.py
similarity index 82%
rename from file_io.py
rename to k-teng/utility/file_io.py
index 5326404..a16946b 100644
--- a/file_io.py
+++ b/k-teng/utility/file_io.py
@@ -13,15 +13,14 @@ def get_next_filename(basename, directory=".", digits=3):
get the next filename (without extenstion).
example:
basename = file
- directory has file001, file002, file004
+ directory has file001.csv, file002.pkl, file004.csv
-> return file005
"""
files = listdir(directory)
files.sort()
files.reverse()
- lowest_number = 0
+ lowest_number = -1
for file in files:
- if not path.isfile(file): continue
if not file.startswith(basename): continue
try:
number = int(file.split('.')[0].strip(basename))
@@ -30,4 +29,4 @@ def get_next_filename(basename, directory=".", digits=3):
except ValueError:
continue
- return basename + add_zeros(lowest_number)
+ return basename + add_zeros(lowest_number+1)
diff --git a/k-teng/utility/testing.py b/k-teng/utility/testing.py
new file mode 100644
index 0000000..e2444d6
--- /dev/null
+++ b/k-teng/utility/testing.py
@@ -0,0 +1,38 @@
+
+import pandas as pd
+import numpy as np
+
+def collect_buffer(instr, buffer_nr=1):
+ """
+ Get the buffer as 2D - np.array
+ @param instr : pyvisa instrument
+ @param buffer_nr : 1 or 2, for smua.nvbuffer1 or 2
+ @returns 2D numpy array:
+ i - ith reading:
+ 0: timestamps
+ 1: readings
+ """
+ if buffer_nr == 2: buffername = "smua.nvbuffer2"
+ else: buffername = "smua.nvbuffer1"
+ # instr.write("format.data = format.DREAL\nformat.byteorder = format.LITTLEENDIAN")
+ # buffer = instr.query_binary_values(f"printbuffer(1, {buffername}.n, {buffername})", datatype='d', container=np.array)
+ instr.write("format.data = format.ASCII\nformat.asciiprecision = 7")
+ timestamps = instr.query_ascii_values(f"printbuffer(1, {buffername}.n, {buffername}.timestamps)", container=np.array)
+ readings = instr.query_ascii_values(f"printbuffer(1, {buffername}.n, {buffername}.readings)", container=np.array)
+ print(f"readings: {readings}, \ntimestamps: {timestamps}")
+ buffer = np.vstack((timestamps, readings)).T
+ return buffer
+
+
+def testcurve(x, frequency=10, peak_width=2, amplitude=20, bias=0):
+ # want peak at n*time == frequency
+ nearest_peak = np.round(x / frequency, 0)
+ # if not peak at 0 and within peak_width
+ if nearest_peak > 0 and abs((x - nearest_peak * frequency)) < peak_width:
+ # return sin that does one period within 2*peak_width
+ return amplitude * np.sin(2*np.pi * (x - nearest_peak * frequency - peak_width) / (2*peak_width)) + bias
+ else:
+ return bias
+
+ # 0 = pk - width
+ # 2pi = pk + width
diff --git a/keithley.py b/keithley.py
deleted file mode 100644
index a0bb96a..0000000
--- a/keithley.py
+++ /dev/null
@@ -1,20 +0,0 @@
-import pyvisa
-
-
-def init_keithley(beep_success=True):
- rm = pyvisa.ResourceManager('@py')
- resources = rm.list_resources()
- if len(resources) < 1:
- raise Exception("No resources found.")
- elif len(resources) == 1:
- print(f"Opening Resource {resources[0]}")
- keithley = rm.open_resource(resources[0])
- if beep_success: keithley.write("beeper.beep(0.5, 1000)")
- return keithley
- elif len(resources) > 1:
- print(f"Resources: {resources}")
- instr = int(input("Select an instrument (0-based index)"))
- keithley = rm.open_resource(resources[instr])
- if beep_success: keithley.write("beeper.beep(0.5, 1000)")
- return keithley
-
diff --git a/keithley_interactive.py b/keithley_interactive.py
deleted file mode 100644
index 5e48eb9..0000000
--- a/keithley_interactive.py
+++ /dev/null
@@ -1,70 +0,0 @@
-
-
-"""
-run this before using this library:
-ipython -i keithley_interactive.py
-"""
-
-import numpy as np
-import matplotlib.pyplot as plt
-from sys import exit
-
-settings = {
- "filename": "measurement",
- "interval": 0.01,
- "beep": True,
-}
-
-# global variable for the instrument returned by pyvisa
-k = None
-
-
-def measure():
- global k, settings
- pass
-
-def monitor():
- """
- Monitor the voltage with matplotlib.
-
- @details:
- - Resets the buffers
- - Opens a matplotlib window and takes measurements depending on settings["interval"]
- - Waits for the user to press a key
- You can take the data from the buffer afterwards, using TODO
- """
- data = []
- for _ in range(1000):
- # data.append(tuple(float(v) for v in instr.query("print(smua.measure.v())").strip('\n').split('\t')))
- data.append(np.random())
- # print(i, data[-1])
- # clear_output(wait=True)
- plt.plot(data)
- plt.show()
- sleep(settings["interval"])
- pass
-
-def save_csv():
- global k, settings
- """
- Saves the contents of nvbuffer1 as csv
- """
- pass
-
-def help():
- print("""
-
- """)
-
-def init():
- global k, settings
- print("""Interactive Keithley-Shell for TENG measurements.
-Version 1.0
----
-Enter 'help()' for a list of commands""")
- from keithley import init_keithley
- try:
- k = init_keithley(beep_success=settings["beep"])
- except Exception as e:
- print(e)
- exit()
diff --git a/measurement.ipynb b/measurement.ipynb
index 652e0d1..6beea1a 100644
--- a/measurement.ipynb
+++ b/measurement.ipynb
@@ -191,121 +191,30 @@
},
{
"cell_type": "code",
- "execution_count": 15,
+ "execution_count": 2,
"id": "3390e755-9e37-4b12-8499-9afb577d6505",
"metadata": {
"tags": []
},
"outputs": [
{
- "name": "stdout",
- "output_type": "stream",
- "text": [
- "[[ 0.000000e+00 4.974127e-10]\n",
- " [ 5.000000e-02 -1.418591e-12]\n",
- " [ 1.000000e-01 -1.573563e-12]\n",
- " [ 1.500000e-01 -1.728535e-12]\n",
- " [ 2.000000e-01 -1.704693e-12]\n",
- " [ 2.500000e-01 -1.847744e-12]\n",
- " [ 3.000000e-01 -1.931190e-12]\n",
- " [ 3.500000e-01 -1.788139e-12]\n",
- " [ 4.000000e-01 -1.871586e-12]\n",
- " [ 4.500000e-01 -2.169609e-12]\n",
- " [ 5.000000e-01 -2.074242e-12]\n",
- " [ 5.500000e-01 -1.895428e-12]\n",
- " [ 6.000000e-01 -1.895428e-12]\n",
- " [ 6.500000e-01 -1.776218e-12]\n",
- " [ 7.000000e-01 -1.990795e-12]\n",
- " [ 7.500000e-01 -1.788139e-12]\n",
- " [ 8.000000e-01 -1.811981e-12]\n",
- " [ 8.500000e-01 -1.657009e-12]\n",
- " [ 9.000000e-01 -1.573563e-12]\n",
- " [ 9.500000e-01 -2.396107e-12]\n",
- " [ 1.000000e+00 -2.515316e-12]\n",
- " [ 1.050000e+00 -2.765656e-12]\n",
- " [ 1.100000e+00 -2.825260e-12]\n",
- " [ 1.150000e+00 -3.147125e-12]\n",
- " [ 1.200000e+00 -2.300739e-12]\n",
- " [ 1.250000e+00 -2.825260e-12]\n",
- " [ 1.300000e+00 -3.278255e-12]\n",
- " [ 1.350000e+00 -5.257130e-12]\n",
- " [ 1.400000e+00 -6.818771e-12]\n",
- " [ 1.450000e+00 -8.916855e-12]\n",
- " [ 1.500000e+00 -7.712841e-12]\n",
- " [ 1.550000e+00 6.437302e-12]\n",
- " [ 1.600000e+00 -1.142025e-11]\n",
- " [ 1.690891e+00 -1.206398e-11]\n",
- " [ 1.710923e+00 -4.649043e-10]\n",
- " [ 1.750000e+00 -3.427613e-09]\n",
- " [ 1.800000e+00 -2.460408e-09]\n",
- " [ 1.850000e+00 -2.340376e-09]\n",
- " [ 1.900000e+00 -1.306653e-10]\n",
- " [ 1.950000e+00 1.496077e-11]\n",
- " [ 2.000000e+00 2.933741e-11]\n",
- " [ 2.050000e+00 1.953280e-09]\n",
- " [ 2.100000e+00 8.579970e-10]\n",
- " [ 2.150000e+00 9.226799e-12]\n",
- " [ 2.200000e+00 -1.095533e-11]\n",
- " [ 2.250000e+00 -2.508163e-11]\n",
- " [ 2.300000e+00 -2.776039e-09]\n",
- " [ 2.350000e+00 -8.686423e-09]\n",
- " [ 2.420332e+00 4.935264e-12]\n",
- " [ 2.450000e+00 1.246929e-11]\n",
- " [ 2.500000e+00 3.225744e-09]\n",
- " [ 2.550000e+00 2.814472e-09]\n",
- " [ 2.600000e+00 1.877034e-09]\n",
- " [ 2.650000e+00 2.229273e-09]\n",
- " [ 2.700000e+00 1.713574e-09]\n",
- " [ 2.750000e+00 8.355618e-10]\n",
- " [ 2.820553e+00 -4.332781e-10]\n",
- " [ 2.890843e+00 5.896091e-11]\n",
- " [ 2.910875e+00 5.762577e-11]\n",
- " [ 2.950000e+00 8.129537e-09]\n",
- " [ 3.000000e+00 4.044378e-09]\n",
- " [ 3.050000e+00 1.771629e-09]\n",
- " [ 3.100000e+00 7.849216e-10]\n",
- " [ 3.150000e+00 4.098892e-10]\n",
- " [ 3.200000e+00 3.390551e-10]\n",
- " [ 3.250000e+00 2.956390e-10]\n",
- " [ 3.300000e+00 3.033876e-10]\n",
- " [ 3.350000e+00 1.716256e-10]\n",
- " [ 3.400000e+00 1.463890e-11]\n",
- " [ 3.450000e+00 -5.078316e-12]\n",
- " [ 3.500000e+00 -6.949902e-12]\n",
- " [ 3.550000e+00 -8.106232e-12]\n",
- " [ 3.600000e+00 -6.473065e-12]\n",
- " [ 3.650000e+00 -4.506111e-12]\n",
- " [ 3.700000e+00 4.919767e-11]\n",
- " [ 3.750000e+00 3.052297e-08]\n",
- " [ 3.800000e+00 1.161162e-08]\n",
- " [ 3.850000e+00 -9.892106e-09]\n",
- " [ 3.900000e+00 -3.613818e-09]\n",
- " [ 3.950000e+00 -5.004287e-09]\n",
- " [ 4.000000e+00 -2.015829e-11]\n",
- " [ 4.050000e+00 -4.183054e-11]\n",
- " [ 4.100000e+00 -1.810908e-10]\n",
- " [ 4.150000e+00 -2.042532e-10]\n",
- " [ 4.200000e+00 -3.516316e-10]\n",
- " [ 4.250000e+00 5.099773e-11]\n",
- " [ 4.300000e+00 1.921976e-08]\n",
- " [ 4.350000e+00 -1.256589e-08]\n",
- " [ 4.400000e+00 -4.242897e-10]\n",
- " [ 4.450000e+00 -1.358986e-12]\n",
- " [ 4.500000e+00 -3.445148e-12]\n",
- " [ 4.550000e+00 -3.838539e-12]\n",
- " [ 4.600000e+00 -4.184246e-12]\n",
- " [ 4.650000e+00 -7.402897e-12]\n",
- " [ 4.700000e+00 -2.840877e-10]\n",
- " [ 4.750000e+00 -2.872229e-10]\n",
- " [ 4.800000e+00 -2.730966e-10]\n",
- " [ 4.850000e+00 -1.134396e-10]\n",
- " [ 4.900000e+00 -4.376173e-11]\n",
- " [ 4.950000e+00 -3.576279e-14]]\n"
+ "ename": "NameError",
+ "evalue": "name 'buffer1' is not defined",
+ "output_type": "error",
+ "traceback": [
+ "\u001b[0;31m---------------------------------------------------------------------------\u001b[0m",
+ "\u001b[0;31mNameError\u001b[0m Traceback (most recent call last)",
+ "Cell \u001b[0;32mIn[2], line 1\u001b[0m\n\u001b[0;32m----> 1\u001b[0m \u001b[38;5;28mprint\u001b[39m(\u001b[43mbuffer1\u001b[49m)\n\u001b[1;32m 2\u001b[0m \u001b[38;5;28;01mimport\u001b[39;00m \u001b[38;5;21;01mpandas\u001b[39;00m \u001b[38;5;28;01mas\u001b[39;00m \u001b[38;5;21;01mpd\u001b[39;00m\n\u001b[1;32m 3\u001b[0m df \u001b[38;5;241m=\u001b[39m pd\u001b[38;5;241m.\u001b[39mDataFrame(buffer1)\n",
+ "\u001b[0;31mNameError\u001b[0m: name 'buffer1' is not defined"
]
}
],
"source": [
- "print(buffer1)"
+ "print(buffer1)\n",
+ "import pandas as pd\n",
+ "df = pd.DataFrame(buffer1)\n",
+ "df.colums = [\"Time [s]\", \"Voltage [V]\"]\n",
+ "df.save_csv(\"test.csv\")"
]
},
{
diff --git a/setup.py b/setup.py
new file mode 100755
index 0000000..3af611e
--- /dev/null
+++ b/setup.py
@@ -0,0 +1,28 @@
+from setuptools import setup
+
+setup(
+ name="keithley-teng",
+ version="0.1",
+ description="Utility for measuring TENG-sensor output with a Keithley 2600B SMU",
+
+ author="Matthias Quintern",
+ author_email="matthias.quintern@tum.de",
+
+ url="https://git.quintern.xyz/MatthiasQuintern/teng-measurement.git",
+
+ license="GPLv3",
+
+ packages=["keithley-teng"],
+ # packages=setuptools.find_packages(),
+ install_requires=["pyvisa", "pyvisa-py"],
+
+ classifiers=[
+ "Programming Language :: Python :: 3",
+ ],
+
+ # entry_points={
+ # "console_scripts": [ "teng=teng.interactive:main" ],
+ # },
+)
+
+